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How do you resolve module conflicts?

Question asked by John Allen on Jun 20, 2014
For SugarCRM 6.5.x, modules that can be downloaded from SugarForge, Sugar Outfitters and other sources naturally override the same points in the extension framework.  For instance, many of them override the view classes (view.list.php, view.detail.php, etc.) for the standard SugarCRM modules.  I've also overridden these same classes to meet my requirements and install my changes through the Module Loader.  When multiple Module Loader-installable modules override the same extension points, is there any alternative to manually merging them?